Customized genome annotation for iDEP and ShinyGO  
Currently iDEP and ShinyGO contains annotation for species in Ensembl and STRING-db.
If you are working on a species that is not annotated in these database, you can request that we add these annotations to our database. We prioritize genomes that are used by many researchers.  You can contact researchers in other labs but studying the same species to fill in this form.  There is no guarantee on when or if we can add your genome into our database.

If your genome annotation is used just for one research lab, or you are in a for-profit institution, we might be able to accomplish this through paid services.

See examples: http://bioinformationcs.sdstate.edu/idepc/ and http://bioinformationcs.sdstate.edu/goc/

At a minimum, we need a mapping of gene ids to pathways.

For questions, please contact Jenny at  gelabinfo@gmail.com 

Your Name *
Email *
Role *
Institution / University *
PI Name *
PI email *
Species: Common name *
Species: Academic Name *
Species types *
Species: NCBI taxonomy ID *
Species: KEGG species code  such as hsa for human
Species: Genome assembly version
Genome assembly website
Example gene IDs: paste 10-20 gene ids. This could be copy-pasted from RNA-Seq data files, for example.
Direct link to genome and protein sequences, if available. It can be a link to a website, or a shared Google drive or other folder.  You can also send us zip files via email.
Direct link to gene annotation (GFF or GFF3) files. It can be a link to a website, or a shared folder on services like Google drive.  You can also email us zip files.
Direct link to pathway annotation files (Gene Ontology, KEGG, or custom pathway files).  GMT format is prefered, but other format is also acceptable.  If not available, we will try to compile it. It can be a link to a website, or a shared folder on services like Google drive.  You can also email us zip files.
Direct link to gene ID mapping files (Gene Ontology, KEGG, or custom pathway files), if available.  Some organisms have different types of gene IDs. We map to one primary ID type.  GMT format is prefered, but other format is also acceptable.  If not available, we will try to compile it. It can be a link to a website, or a shared folder on services like Google drive.  You can also email us zip files.
Optional: Evidence that this genome is useful to many other researchers?
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