PGC Functional Genomics DATA CENSUS

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Email *

PI name, Institution *

PI contact email (if different from above)

Study coordinator contact email (optional)

Name of the cohort

What kind of study is this? *

Population cohort

Case control cohort

Patient cohort (no controls)

Trial

Other:

Required

Study design *

Cross-sectional

Longitudinal

Other:

Diagnostic data available in cohort *

Alzheimer's Disease

Attention Deficit Hyperactivity Disorder

Anxiety Disorders

Autism Spectrum Disorder

Bipolar Disorder

Eating Disorders

Major Depressive Disorder

Obsessive-Compulsive Disorder

Post-Traumatic Stress Disorder

Schizophrenia

Substance Use Disorders

Suicide

Tourette Syndrome

Other:

Required

Cohort sample size with omic data available.

Please give the maximum N, if not all omic data are available on all participants.

What BRAIN data have been collected and are potentially shareable?

Bulk brain

Sorted cells

Single cell

Brain organoid

CSF

Methylation

ATACseq

Histone modifications

RNA sequencing

Microarray

Proteomics

Cytometry (flow, CyTOF)

Metabolomics

Lipidomics

Other

What NON-BRAIN data have been collected and are potentially shareable?

Whole blood

Serum/plasma

PBMCs

Sorted cells

Single cells

iPSC cells

Saliva

Methylation

ATACseq

Histone modifications

RNA sequencing

Microarray

Proteomics

Cytometry (flow, CyTOF)

Metabolomics

Lipidomics

Other

Are genotyping data also available for this cohort? (regardless of whether you can share the individual level data).

Please tick all that apply

Yes - GWAS array

Yes - exome sequencing

Yes - whole genome sequencing

We may generate additional genotyping data in the future

Required

Are you able to share individual level molecular epidemiology data or only case-control summary statistics?

Individual-level omic data (e.g. proteomic data, methylation data, gene expression count matrices etc.)

Summary statistics for case-control differences (e.g. PWAS, MWAS summary statistics)

Not applicable

Clear selection

If you have genotyping data, are you able to share individual-level genotype data from your dataset, or only QTL summary statistics?

Individual-level genotyping data

QTL summary statistics only (QTLs already calculated)

QTL summary statistics only (QTLs possible but not yet calculated)

Not applicable - no genotyping data

Clear selection

Are microbiome data also available for this cohort? *

Yes

Included ancestries *

European

East Asian

Admixed American (e.g. Latin American)

African

South Asian

Other:

Required

Sex *

Females

Males

Both

Cohort ages included (tick all that apply) *

Prenatal

0-5 years old

5-18 years

18-65 years

>65 years old

Required

What other 'omic data will potentially be forthcoming from this cohort in the years to come?

Please outline which tissues and assays are planned, including likely technologies that will be used, as we aim to coordinate experimental methods across cohorts.

What other clinical scales are available in this cohort?

Please tick which of the following information is also recorded or could be derived for participants e.g. via questionnaires or electronic health record linkage

Current smoking status

Medical comorbidities

Current medication use

Stress or trauma exposure

Exposure to infections

Treatment response

Please outline any data sharing restrictions for this cohort or any data transfer agreements that would need to be in place

Additional information about the cohort

PMIDs of any publications that describe these data.

Accession IDs for any deposited omic data from this cohort (e.g. GEO etc.)

Do you want to include another cohort? *

Yes

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