CLIMB-BIG-DATA users questionnaire

JavaScript isn't enabled in your browser, so this file can't be opened. Enable and reload.

We are working to improve what we offer on CLIMB-BIG-DATA: what tools/software are most relevant to you? We created this form to learn more about your experience, interests and intended use of CLIMB-BD.
Thanks to your answers, we will priorities what is most relevant to you.

Your name and surname (optional)

Your email address (optional)

What are the bioinformatics analyses that you commonly perform?

De novo genome assembly

Phylogenetics/Phylogenomics

Metataxonomics/Metabarcoding e.g. 16S Amplicon, ITS1/2 Amplicon

Metataxonomics (WGS)

Metagenomics (WGS) e.g. MAGS assembly, binning

RNA-Seq

Read mapping & variant calling (short reads)

Read mapping & variant calling (long reads)

AMR / ARG prediction

Basecalling long read data

Other:

Which platforms you would like to use as a centralised service?

Galaxy

R Studio

Jupyter Notebook

EDGE Bioinformatics

Other:

Are you using any of the following?

These are a variety of tools that assist your analysis

Nextflow

Snakemake

Brew

Docker

Singularity

Bpipe

Conda

Other:

What bioinformatics tools do you commonly use? (I.e. BLAST, Kraken2, DIAMOND, HISAT2, SPADES, MegaHIT, Canu, Unicycler, Qiime2, Prokka, MLST -Torstyverse-, SKESA, Flye, EggNog, Glimmer, Ariba, Abricate, Mothur, Snippy, BBtools, BWA, BEAST, IQTree, RaxML, Guppy, Bowtie2, GATK, BBtools, Minimap2, ...)

What databases or reference genomes do you commonly use? I.e. Complete genomes (i.e. Genbank/Refseq), NCBI non-redundant databases (nr/nt), Sequence read data (i.e. SRA/ENA), GTDB, SILVA, COG,...

Submit

Clear form

Never submit passwords through Google Forms.

This content is neither created nor endorsed by Google. Report Abuse - Terms of Service - Privacy Policy

Forms