Date： Mar. 11 (Mon.), 2024 16:00-17:00
Place: On Zoom and Seminar Room 5 (A615), ISSP（Hybrid）
Speaker: Prof. Wataru Shinoda
Affiliation: Research Institute for Interdisciplinary Science, Okayama University
Title: Simulating endosomal escape of lipid nanoparticles: A coarse-grained molecular dynamics study
Abstract：
We illustrate here our recent application study of our quantitative coarse-grained model; SPICA force field[1-4], to investigate the endosomal escape mechanism of lipid nanoparticles(LNPs). LNPs are one of the most promising non-viral gene delivery carriers.
LNPs have recently been employed in mRNA vaccines and are expected to have applications in cancer therapy and regenerative medicine. LNPs administered to the body enter the cell by endocytosis. Nucleic acids must be released into the cytoplasm before they are degraded by a drop in pH in the endosome (transfection), but in many cases, only a few percent are released.
The molecular mechanism is still elusive because it occurs at the nanoscale. Therefore, Clarifying this phenomenon through molecular dynamics (MD) simulations will enable a more effective design of LNPs with high drug release efficiency.
In this study, a series of large-scale coarse-grained MD simulations of LNPs fusing to endosomal membranes has been performed using the SPICA force field. In particular, the fusion mechanism of LNPs with the endosomal membrane was examined in the context of the efficiency of the endosomal escape.
We would also like to show the performance of the SPICA force field for this complex system, including a variety of lipids, sterols, and nucleic acids.
[1] Seo & Shinoda, J. Chem. Theory Comput. 15, 762 (2019).
[2] Kawamoto et al., J. Chem. Theory Comput. 18, 3204 (2022).
[3] Yamada et al., J. Chem. Theory Comput. 19, 8967 (2023).
[4] URL https://www.spica-ff.org/
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Contact : Taisuke Ozaki（ext. 63285）
e-mail: t-ozaki@issp.u-tokyo.ac.jp
