Module 6: Genetic Variation
  1. Overview and Aims
  2. Quality control of raw sequencing data
  3. Preparing your reference sequence prior to mapping
  4. Short read mapping
  5. Calling SNPs in our mapped sample
  6. Visualising mapped reads and variants using Artemis
  7. Mapping reads from multiple samples
  8. Calling SNPs in multiple samples at the same time
  9. Visualing SNP data using WormBase ParaSite and Artemis
  10. Analysis of genetic variation using R
  11. Principal component analysis of genetic diversity
  12. Exploring genetic data using phylogenetic trees
  13. Integrating genetic and geographic data: maps
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