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Grapedia
The Grapevine Genomics Encyclopedia
* Zorunlu soruyu belirtir
Q1 - Are you from (specify, if possible, in ‘Other’):
*
Industry (plant breeding, winery, commerce, etc)
Academy (researcher)
Academy (student)
Diğer:
Q2 - In your opinion, what are the various challenges that the grapevine sector (viticulture, wine production) will face in the upcoming coming years?
*
Yanıtınız
Q3 - In your opinion, what are the various challenges that the grapevine research sector will face in the upcoming coming years?
*
Yanıtınız
Q4 - Do you think the grapevine community (research and industry) needs a centralized platform to tackle the challenges from Q2 and Q3?
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Yes
No
Q5 - What would you expect from a centralized grapevine portal?
*
Yanıtınız
Q6 - What kind of data should be present in this database? Score according to importance (1-low importance; 5-highest importance)
I. Genomics
Genome assemblies and gene annotations.
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1
2
3
4
5
Genome variation in a collection (SNPs/InDels/MNPs/SV/CNV).
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1
2
3
4
5
Raw WGS data.
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1
2
3
4
5
Epigenomics.
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1
2
3
4
5
II. Transcriptomics
Gene expression atlases.
*
1
2
3
4
5
Co-expression networks.
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1
2
3
4
5
Raw/pre-processed WTS data.
*
1
2
3
4
5
III. Metabolomics
Gene associated to metabolic pathways.
*
1
2
3
4
5
Grape metabolite catalog and profiles.
*
1
2
3
4
5
IV. Genetics & Breeding.
Pedigree.
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1
2
3
4
5
Genetic maps.
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1
2
3
4
5
QTL.
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1
2
3
4
5
Gene and gene family catalogues.
*
1
2
3
4
5
GWAS.
*
1
2
3
4
5
Phenotypic data.
*
1
2
3
4
5
V. Ecology and Evolution.
Phylogenies.
*
1
2
3
4
5
Biodiversity collections.
*
1
2
3
4
5
Climate-related data.
*
1
2
3
4
5
Climate warming agricultural impact models.
*
1
2
3
4
5
VI. Other type of data not considered here?
*
Yanıtınız
Q7- What kind of analysis tools would you like to have in this database (1-low importance; 5-highest importance)
Genome comparative tools.
*
1
2
3
4
5
Gene dashboards.
*
1
2
3
4
5
Transcriptomics visualizations.
*
1
2
3
4
5
Workflows (e.g., Galaxy)
*
1
2
3
4
5
Others.
Yanıtınız
Q8- What percentage of the data showcased in this portal should be open access? (0-100)
*
Yanıtınız
Q9- Would you be willing to pay a fee for extra services or more curated data? (1-not at all; 5-definitely)
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1
2
3
4
5
Q10. Which kind of services within the DB would you be willing to pay at an extra fee? Ideas. (1-low importance; 5-highest importance)
Data analysis (e.g., transcriptomic analysis including downstream analysis).
*
1
2
3
4
5
Software application development (e.g., field phenotyping tool connected to some Grapedia federated resources using BraPi).
*
1
2
3
4
5
Applied tools development (e.g., pathogen identification through molecular and image analysis tool).
*
1
2
3
4
5
Diagnosis (kits involving sampling reception, sequencing, result presentations)
*
1
2
3
4
5
Consulting.
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1
2
3
4
5
Extra data curation (manual curated metadata such as: metadata on experimental designs, preprocessed or processed data such as normalized expression matrices, phenotyping data using ontologies, experimental conditions using ontologies)
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1
2
3
4
5
Q11. How do you think the industry could benefit from such a portal?
*
Yanıtınız
Q12. How do you think the industry could contribute to this portal?
*
Yanıtınız
Q13. Would you like to contribute to Grapedia? If so, how would you do it?
Economical support. I am willing to fund the development of some public projects.
*
1
2
3
4
5
Personnel support. I am willing to dedicate some people in my group to develop some of the grapedia projects.
*
1
2
3
4
5
Grant-writing support. I am willing to spend part of my time advising and helping to develop proposals for the whole Grapedia or different subprojects.
*
1
2
3
4
5
Training support.
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1
2
3
4
5
Public engagement support.
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1
2
3
4
5
Data provider.
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1
2
3
4
5
Beta testing and feature requests.
*
1
2
3
4
5
Q14. (Optional)
Name:
Yanıtınız
Institute:
Yanıtınız
E-mail:
Yanıtınız
Gönder
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